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<a href="RolkeExample_8C.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="YamlLoader_8h.html">File/YamlLoader.h</a>&quot;</span></div><div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="TerminalIO_8h.html">Functions/TerminalIO.h</a>&quot;</span></div><div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="preprocessor">#include &quot;Riostream.h&quot;</span></div><div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="preprocessor">#include &quot;TROOT.h&quot;</span></div><div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="preprocessor">#include &quot;TRolke.h&quot;</span></div><div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="preprocessor">#include &quot;TSystem.h&quot;</span></div><div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="keyword">using namespace </span><a class="code" href="namespacestd.html">std</a>;</div><div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="keyword">using namespace </span><a class="code" href="namespaceBOSS__Afterburner_1_1TerminalIO.html">BOSS_Afterburner::TerminalIO</a>;</div><div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;</div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;</div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="keywordtype">void</span> <a class="code" href="group__Afterburner__scripts.html#ga485a4127e521f6a858d8238c5a4bee5c">Rolke</a>(<span class="keyword">const</span> <span class="keywordtype">char</span>* config_file)</div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;{</div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;  <a class="code" href="classYamlLoader.html">YamlLoader</a> conf(config_file);</div><div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;</div><div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;  <span class="comment">// Number of observed events in the experiment</span></div><div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;  Int_t x;</div><div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;</div><div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;  <span class="comment">// Number of observed events in background region</span></div><div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;  Int_t y;</div><div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;  <span class="comment">// Either: the ratio between signal and background region in case background is observed.</span></div><div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;  <span class="comment">// Or: the ratio between observed and simulated live-time in case background is determined from MC.</span></div><div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;  Double_t tau;</div><div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;</div><div class="line"><a name="l00030"></a><span class="lineno">   30</span>&#160;  <span class="comment">// Estimate of the background</span></div><div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;  Double_t bm;</div><div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;  <span class="comment">// Standard deviation of the background estimate</span></div><div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;  Double_t sdb;</div><div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;  <span class="comment">// Estimate of the efficiency</span></div><div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;  Double_t em;</div><div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;  <span class="comment">// Standard deviation of the efficiency estimate</span></div><div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;  Double_t sde;</div><div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;</div><div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;  <span class="comment">// Number of MC events generated</span></div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;  Int_t m;</div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;  <span class="comment">// Number of MC events observed</span></div><div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;  Int_t z;</div><div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;</div><div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;  <span class="comment">// True efficiency (considered known)</span></div><div class="line"><a name="l00045"></a><span class="lineno">   45</span>&#160;  Double_t e;</div><div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;  <span class="comment">// Background expectation value (considered known)</span></div><div class="line"><a name="l00047"></a><span class="lineno">   47</span>&#160;  Double_t b;</div><div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;  <span class="comment">// Confidence Level</span></div><div class="line"><a name="l00049"></a><span class="lineno">   49</span>&#160;  Double_t alpha;</div><div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;</div><div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;  <span class="comment">// Make TRolke objects</span></div><div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;  TRolke   tr; <span class="comment">//</span></div><div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;  Double_t ul; <span class="comment">// Upper limit</span></div><div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;  Double_t ll; <span class="comment">// Lower limit</span></div><div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;</div><div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model1 = conf[<span class="stringliteral">&quot;Model 1&quot;</span>];</div><div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;  <span class="keywordflow">if</span>(model1)</div><div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;  {</div><div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;    x     = model1[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;    y     = model1[<span class="stringliteral">&quot;Number of observed events in background region&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    tau   = model1[<span class="stringliteral">&quot;Ratio between signal and background region&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    m     = model1[<span class="stringliteral">&quot;Number of MC events generated&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    z     = model1[<span class="stringliteral">&quot;Number of MC events observed&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    alpha = model1[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    tr.SetPoissonBkgBinomEff(x, y, z, tau, m);</div><div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 1: Poisson / Binomial&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;  }</div><div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;</div><div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model2 = conf[<span class="stringliteral">&quot;Model 2&quot;</span>];</div><div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;  <span class="keywordflow">if</span>(model2)</div><div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;  {</div><div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    x     = model2[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;    y     = model2[<span class="stringliteral">&quot;Number of observed events in background region&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;    tau   = model2[<span class="stringliteral">&quot;Ratio between signal and background region&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;    em    = model2[<span class="stringliteral">&quot;Estimate of the efficiency&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    sde   = model2[<span class="stringliteral">&quot;Standard deviation of the efficiency estimate&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;    alpha = model2[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    tr.SetPoissonBkgGaussEff(x, y, em, tau, sde);</div><div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 2 : Poisson / Gaussian&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;  }</div><div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;</div><div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model3 = conf[<span class="stringliteral">&quot;Model 3&quot;</span>];</div><div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;  <span class="keywordflow">if</span>(model3)</div><div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;  {</div><div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;    x     = model3[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;    bm    = model3[<span class="stringliteral">&quot;Estimate of the background&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    sdb   = model3[<span class="stringliteral">&quot;Standard deviation of the background estimate&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    em    = model3[<span class="stringliteral">&quot;Estimate of the efficiency&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;    sde   = model3[<span class="stringliteral">&quot;Standard deviation of the efficiency estimate&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    alpha = model3[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;    tr.SetGaussBkgGaussEff(x, bm, em, sde, sdb);</div><div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 3 : Gaussian / Gaussian&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;***************************************&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;* some more example&#39;s for gauss/gauss *&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;*                                     *&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    Double_t slow, shigh;</div><div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;    tr.GetSensitivity(slow, shigh);</div><div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;sensitivity:&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; slow &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; shigh &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;    <span class="keywordtype">int</span> outx;</div><div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;    tr.GetLimitsQuantile(slow, shigh, outx, 0.5);</div><div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;median limit:&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; slow &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; shigh &lt;&lt; <span class="stringliteral">&quot;] @ x =&quot;</span> &lt;&lt; outx &lt;&lt; endl;</div><div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    tr.GetLimitsML(slow, shigh, outx);</div><div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;ML limit:&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; slow &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; shigh &lt;&lt; <span class="stringliteral">&quot;] @ x =&quot;</span> &lt;&lt; outx &lt;&lt; endl;</div><div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;    tr.GetSensitivity(slow, shigh);</div><div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;sensitivity:&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; slow &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; shigh &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;    Int_t ncrt;</div><div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;    tr.GetCriticalNumber(ncrt);</div><div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;critical number: &quot;</span> &lt;&lt; ncrt &lt;&lt; endl;</div><div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;    tr.SetCLSigmas(5);</div><div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;    tr.GetCriticalNumber(ncrt);</div><div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;critical number for 5 sigma: &quot;</span> &lt;&lt; ncrt &lt;&lt; endl;</div><div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;***************************************&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;  }</div><div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;</div><div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model4 = conf[<span class="stringliteral">&quot;Model 4&quot;</span>];</div><div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;  <span class="keywordflow">if</span>(model4)</div><div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;  {</div><div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;    x     = model4[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    y     = model4[<span class="stringliteral">&quot;Number of observed events in background region&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;    tau   = model4[<span class="stringliteral">&quot;Ratio between signal and background region&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;    e     = model4[<span class="stringliteral">&quot;True efficiency (considered known)&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    alpha = model4[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00159"></a><span class="lineno">  159</span>&#160;    tr.SetPoissonBkgKnownEff(x, y, tau, e);</div><div class="line"><a name="l00160"></a><span class="lineno">  160</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00161"></a><span class="lineno">  161</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 4 : Poissonian / Known&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;  }</div><div class="line"><a name="l00165"></a><span class="lineno">  165</span>&#160;</div><div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model5 = conf[<span class="stringliteral">&quot;Model 5&quot;</span>];</div><div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;  <span class="keywordflow">if</span>(model5)</div><div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;  {</div><div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    bm    = model5[<span class="stringliteral">&quot;Estimate of the background&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160;    x     = model5[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    e     = model5[<span class="stringliteral">&quot;True efficiency (considered known)&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    sdb   = model5[<span class="stringliteral">&quot;Standard deviation of background estimate&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    alpha = model5[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    tr.SetGaussBkgKnownEff(x, bm, sdb, e);</div><div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 5 : Gaussian / Known&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;  }</div><div class="line"><a name="l00185"></a><span class="lineno">  185</span>&#160;</div><div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model6 = conf[<span class="stringliteral">&quot;Model 6&quot;</span>];</div><div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;  <span class="keywordflow">if</span>(model6)</div><div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;  {</div><div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;    b     = model6[<span class="stringliteral">&quot;Background expectation value (considered known)&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;    x     = model6[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;    m     = model6[<span class="stringliteral">&quot;Number of MC events generated&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;    z     = model6[<span class="stringliteral">&quot;Number of MC events observed&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;    alpha = model6[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;    tr.SetKnownBkgBinomEff(x, z, m, b);</div><div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 6 : Known / Binomial&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00203"></a><span class="lineno">  203</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;  }</div><div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;</div><div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; model7 = conf[<span class="stringliteral">&quot;Model 7&quot;</span>];</div><div class="line"><a name="l00210"></a><span class="lineno">  210</span>&#160;  <span class="keywordflow">if</span>(model7)</div><div class="line"><a name="l00211"></a><span class="lineno">  211</span>&#160;  {</div><div class="line"><a name="l00212"></a><span class="lineno">  212</span>&#160;    cout &lt;&lt; endl &lt;&lt; <span class="stringliteral">&quot; ======================================================== &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    x     = model7[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;    em    = model7[<span class="stringliteral">&quot;Estimate of the efficiency&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00215"></a><span class="lineno">  215</span>&#160;    sde   = model7[<span class="stringliteral">&quot;Standard deviation of the efficiency estimate&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00216"></a><span class="lineno">  216</span>&#160;    b     = model7[<span class="stringliteral">&quot;Background expectation value (considered known)&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;    alpha = model7[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;    y     = 1;</div><div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;    tr.SetKnownBkgGaussEff(x, em, sde, b);</div><div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00222"></a><span class="lineno">  222</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;For model 7 : Known / Gaussian &quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;  }</div><div class="line"><a name="l00226"></a><span class="lineno">  226</span>&#160;</div><div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;  <span class="keyword">const</span> <span class="keyword">auto</span>&amp; bounding = conf[<span class="stringliteral">&quot;Bounding&quot;</span>];</div><div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;  <span class="keywordflow">if</span>(bounding)</div><div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160;  {</div><div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;    bm    = bounding[<span class="stringliteral">&quot;Estimate of the background&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    tau   = bounding[<span class="stringliteral">&quot;Ratio between signal and background region&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;    m     = bounding[<span class="stringliteral">&quot;Number of MC events generated&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    z     = bounding[<span class="stringliteral">&quot;Number of MC events observed&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;    y     = bounding[<span class="stringliteral">&quot;Number of observed events in background region&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;    x     = bounding[<span class="stringliteral">&quot;Number of observed events in the experiment&quot;</span>].as&lt;Int_t&gt;();</div><div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;    alpha = bounding[<span class="stringliteral">&quot;Confidence Level&quot;</span>].as&lt;Double_t&gt;();</div><div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160;    tr.SetCL(alpha);</div><div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;    tr.SetPoissonBkgBinomEff(x, y, z, tau, m);</div><div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;    tr.SetBounding(<span class="keyword">true</span>); <span class="comment">// bounded</span></div><div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;Example of the effect of bounded vs unbounded, For model 1&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the BOUNDED Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;    tr.SetBounding(<span class="keyword">false</span>); <span class="comment">// unbounded</span></div><div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;    tr.GetLimits(ll, ul);</div><div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;the UNBOUNDED Profile Likelihood interval is :&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;    cout &lt;&lt; <span class="stringliteral">&quot;[&quot;</span> &lt;&lt; ll &lt;&lt; <span class="stringliteral">&quot;,&quot;</span> &lt;&lt; ul &lt;&lt; <span class="stringliteral">&quot;]&quot;</span> &lt;&lt; endl;</div><div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;  }</div><div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;}</div><div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;</div><div class="line"><a name="l00254"></a><span class="lineno"><a class="line" href="RolkeExample_8C.html#a0ddf1224851353fc92bfbff6f499fa97">  254</a></span>&#160;<span class="keywordtype">int</span> <a class="code" href="RolkeExample_8C.html#a0ddf1224851353fc92bfbff6f499fa97">main</a>(<span class="keywordtype">int</span> argc, <span class="keywordtype">char</span>* argv[])</div><div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;{</div><div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;  <a class="code" href="namespaceBOSS__Afterburner_1_1TerminalIO.html#a5b35019e4f74baaa75cd1f5de2a97fb7">CheckMainArguments</a>(argc, argv, 1);</div><div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;  <a class="code" href="group__Afterburner__scripts.html#ga485a4127e521f6a858d8238c5a4bee5c">Rolke</a>(argv[1]);</div><div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;  <span class="keywordflow">return</span> 0;</div><div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;}</div><div class="ttc" id="RolkeExample_8C_html_a0ddf1224851353fc92bfbff6f499fa97"><div class="ttname"><a href="RolkeExample_8C.html#a0ddf1224851353fc92bfbff6f499fa97">main</a></div><div class="ttdeci">int main(int argc, char *argv[])</div><div class="ttdef"><b>Definition:</b> <a href="RolkeExample_8C_source.html#l00254">RolkeExample.C:254</a></div></div>
<div class="ttc" id="namespacestd_html"><div class="ttname"><a href="namespacestd.html">std</a></div></div>
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<div class="ttc" id="namespaceBOSS__Afterburner_1_1TerminalIO_html"><div class="ttname"><a href="namespaceBOSS__Afterburner_1_1TerminalIO.html">BOSS_Afterburner::TerminalIO</a></div><div class="ttdef"><b>Definition:</b> <a href="TerminalIO_8h_source.html#l00015">TerminalIO.h:15</a></div></div>
<div class="ttc" id="namespaceBOSS__Afterburner_1_1TerminalIO_html_a5b35019e4f74baaa75cd1f5de2a97fb7"><div class="ttname"><a href="namespaceBOSS__Afterburner_1_1TerminalIO.html#a5b35019e4f74baaa75cd1f5de2a97fb7">BOSS_Afterburner::TerminalIO::CheckMainArguments</a></div><div class="ttdeci">void CheckMainArguments(int argc, char *argv[], int required=1)</div><div class="ttdef"><b>Definition:</b> <a href="TerminalIO_8cxx_source.html#l00013">TerminalIO.cxx:13</a></div></div>
<div class="ttc" id="group__Afterburner__scripts_html_ga485a4127e521f6a858d8238c5a4bee5c"><div class="ttname"><a href="group__Afterburner__scripts.html#ga485a4127e521f6a858d8238c5a4bee5c">Rolke</a></div><div class="ttdeci">void Rolke(const char *config_file)</div><div class="ttdoc">Based on the Rolke example that comes with ROOT, but adapted with YamlLoader. </div><div class="ttdef"><b>Definition:</b> <a href="Rolke_8C_source.html#l00017">Rolke.C:17</a></div></div>
<div class="ttc" id="classYamlLoader_html"><div class="ttname"><a href="classYamlLoader.html">YamlLoader</a></div><div class="ttdef"><b>Definition:</b> <a href="YamlLoader_8h_source.html#l00014">YamlLoader.h:14</a></div></div>
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